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- Institut für Optische Systeme - IOS (25) (remove)

We analyse the results of a finite element simulation of a macroscopic model, which describes the movement of a crowd, that is considered as a continuum. A new formulation based on the macroscopic model from Hughes [2] is given. We present a stable numerical algorithm by approximating with a viscosity solution. The fundamental setting is given by an arbitrary domain that can contain several obstacles, several entries and must have at least one exit. All pedestrians have the goal to leave the room as quickly as possible. Nobody prefers a particular exit.

The main challenge in Bayesian models is to determine the posterior for the model parameters. Already, in models with only one or few parameters, the analytical posterior can only be determined in special settings. In Bayesian neural networks, variational inference is widely used to approximate difficult-to-compute posteriors by variational distributions. Usually, Gaussians are used as variational distributions (Gaussian-VI) which limits the quality of the approximation due to their limited flexibility. Transformation models on the other hand are flexible enough to fit any distribution. Here we present transformation model-based variational inference (TM-VI) and demonstrate that it allows to accurately approximate complex posteriors in models with one parameter and also works in a mean-field fashion for multi-parameter models like neural networks.

Deep neural networks (DNNs) are known for their high prediction performance, especially in perceptual tasks such as object recognition or autonomous driving. Still, DNNs are prone to yield unreliable predictions when encountering completely new situations without indicating their uncertainty. Bayesian variants of DNNs (BDNNs), such as MC dropout BDNNs, do provide uncertainty measures. However, BDNNs are slow during test time because they rely on a sampling approach. Here we present a single shot MC dropout approximation that preserves the advantages of BDNNs without being slower than a DNN. Our approach is to analytically approximate for each layer in a fully connected network the expected value and the variance of the MC dropout signal. We evaluate our approach on different benchmark datasets and a simulated toy example. We demonstrate that our single shot MC dropout approximation resembles the point estimate and the uncertainty estimate of the predictive distribution that is achieved with an MC approach, while being fast enough for real-time deployments of BDNNs.

Probabilistic Deep Learning
(2020)

Probabilistic Deep Learning is a hands-on guide to the principles that support neural networks. Learn to improve network performance with the right distribution for different data types, and discover Bayesian variants that can state their own uncertainty to increase accuracy. This book provides easy-to-apply code and uses popular frameworks to keep you focused on practical applications.

At present, the majority of the proposed Deep Learning (DL) methods provide point predictions without quantifying the model's uncertainty. However, a quantification of the reliability of automated image analysis is essential, in particular in medicine when physicians rely on the results for making critical treatment decisions. In this work, we provide an entire framework to diagnose ischemic stroke patients incorporating Bayesian uncertainty into the analysis procedure. We present a Bayesian Convolutional Neural Network (CNN) yielding a probability for a stroke lesion on 2D Magnetic Resonance (MR) images with corresponding uncertainty information about the reliability of the prediction. For patient-level diagnoses, different aggregation methods are proposed and evaluated, which combine the individual image-level predictions. Those methods take advantage of the uncertainty in the image predictions and report model uncertainty at the patient-level. In a cohort of 511 patients, our Bayesian CNN achieved an accuracy of 95.33% at the image-level representing a significant improvement of 2% over a non-Bayesian counterpart. The best patient aggregation method yielded 95.89% of accuracy. Integrating uncertainty information about image predictions in aggregation models resulted in higher uncertainty measures to false patient classifications, which enabled to filter critical patient diagnoses that are supposed to be closer examined by a medical doctor. We therefore recommend using Bayesian approaches not only for improved image-level prediction and uncertainty estimation but also for the detection of uncertain aggregations at the patient-level.

Mapping of tree seedlings is useful for tasks ranging from monitoring natural succession and regeneration to effective silvicultural management. Development of methods that are both accurate and cost-effective is especially important considering the dramatic increase in tree planting that is required globally to mitigate the impacts of climate change. The combination of high-resolution imagery from unmanned aerial vehicles and object detection by convolutional neural networks (CNNs) is one promising approach. However, unbiased assessments of these models and methods to integrate them into geospatial workflows are lacking. In this study, we present a method for rapid, large-scale mapping of young conifer seedlings using CNNs applied to RGB orthomosaic imagery. Importantly, we provide an unbiased assessment of model performance by using two well-characterised trial sites together containing over 30,000 seedlings to assemble datasets with a high level of completeness. Our results showed CNN-based models trained on two sites detected seedlings with sensitivities of 99.5% and 98.8%. False positives due to tall weeds at one site and naturally regenerating seedlings of the same species led to slightly lower precision of 98.5% and 96.7%. A model trained on examples from both sites had 99.4% sensitivity and precision of 97%, showing applicability across sites. Additional testing showed that the CNN model was able to detect 68.7% of obscured seedlings missed during the initial annotation of the imagery but present in the field data. Finally, we demonstrate the potential to use a form of weakly supervised training and a tile-based processing chain to enhance the accuracy and efficiency of CNNs applied to large, high-resolution orthomosaics.

Fast and reliable acquisition of truth data for document analysis using cyclic suggest algorithms
(2019)

In document analysis the availability of ground truth data plays a crucial role for the success of a project. This is even more true at the rise of new deep learning methods which heavily rely on the availability of training data. But even for traditional, hand crafted algorithms that are not trained on data, reliable test data is important for the improvement and evaluation of the methods. Because ground truth acquisition is expensive and time consuming, semi-automatic methods are introduced which make use of suggestions coming from document analysis systems. The interaction between the human operator and the automatic analysis algorithms is the key to speed up the process while improving the quality of the data. The final confirmation of data may always be done by the human operator. This paper demonstrates a use case for acquisition of truth data in a mail processing system. It shows why a new, extended view on truth data is necessary in development and engineering of such systems. An overview over the tool and the data handling is given, the advantages in the workflow are shown, and consequences for the construction of analysis algorithms are discussed. It can be shown that the interplay between suggest algorithms and human operator leads to very fast truth data capturing. The surprising finding is the fact that if multiple suggest algorithms circularly depend on data, they are especially effective in terms of speed and accuracy.

Pascal Laube presents machine learning approaches for three key problems of reverse engineering of defective structured surfaces: parametrization of curves and surfaces, geometric primitive classification and inpainting of high-resolution textures. The proposed methods aim to improve the reconstruction quality while further automating the process. The contributions demonstrate that machine learning can be a viable part of the CAD reverse engineering pipeline.

We propose a novel end-to-end neural network architecture that, once trained, directly outputs a probabilistic clustering of a batch of input examples in one pass. It estimates a distribution over the number of clusters k, and for each 1≤k≤kmax, a distribution over the individual cluster assignment for each data point. The network is trained in advance in a supervised fashion on separate data to learn grouping by any perceptual similarity criterion based on pairwise labels (same/different group). It can then be applied to different data containing different groups. We demonstrate promising performance on high-dimensional data like images (COIL-100) and speech (TIMIT). We call this “learning to cluster” and show its conceptual difference to deep metric learning, semi-supervise clustering and other related approaches while having the advantage of performing learnable clustering fully end-to-end.

Rheumatoid arthritis is an autoimmune disease that causes chronic inflammation of synovial joints, often resulting in irreversible structural damage. The activity of the disease is evaluated by clinical examinations, laboratory tests, and patient self-assessment. The long-term course of the disease is assessed with radiographs of hands and feet. The evaluation of the X-ray images performed by trained medical staff requires several minutes per patient. We demonstrate that deep convolutional neural networks can be leveraged for a fully automated, fast, and reproducible scoring of X-ray images of patients with rheumatoid arthritis. A comparison of the predictions of different human experts and our deep learning system shows that there is no significant difference in the performance of human experts and our deep learning model.

Multi-Dimensional Connectionist Classification is amethod for weakly supervised training of Deep Neural Networksfor segmentation-free multi-line offline handwriting recognition.MDCC applies Conditional Random Fields as an alignmentfunction for this task. We discuss the structure and patterns ofhandwritten text that can be used for building a CRF. Since CRFsare cyclic graphical models, we have to resort to approximateinference when calculating the alignment of multi-line text duringtraining, here in the form of Loopy Belief Propagation. This workconcludes with experimental results for transcribing small multi-line samples from the IAM Offline Handwriting DB which showthat MDCC is a competitive methodology.

Knot placement for curve approximation is a well known and yet open problem in geometric modeling. Selecting knot values that yield good approximations is a challenging task, based largely on heuristics and user experience. More advanced approaches range from parametric averaging to genetic algorithms.
In this paper, we propose to use Support Vector Machines (SVMs) to determine suitable knot vectors for B-spline curve approximation. The SVMs are trained to identify locations in a sequential point cloud where knot placement will improve the approximation error. After the training phase, the SVM can assign, to each point set location, a so-called score. This score is based on geometric and differential geometric features of points. It measures the quality of each location to be used as knots in the subsequent approximation. From these scores, the final knot vector can be constructed exploring the topography of the score-vector without the need for iteration or optimization in the approximation process. Knot vectors computed with our approach outperform state of the art methods and yield tighter approximations.

Deep neural networks have been successfully applied to problems such as image segmentation, image super-resolution, coloration and image inpainting. In this work we propose the use of convolutional neural networks (CNN) for image inpainting of large regions in high-resolution textures. Due to limited computational resources processing high-resolution images with neural networks is still an open problem. Existing methods separate inpainting of global structure and the transfer of details, which leads to blurry results and loss of global coherence in the detail transfer step. Based on advances in texture synthesis using CNNs we propose patch-based image inpainting by a single network topology that is able to optimize for global as well as detail texture statistics. Our method is capable of filling large inpainting regions, oftentimes exceeding quality of comparable methods for images of high-resolution (2048x2048px). For reference patch look-up we propose to use the same summary statistics that are used in the inpainting process.

In this paper we present a method using deep learning to compute parametrizations for B-spline curve approximation. Existing methods consider the computation of parametric values and a knot vector as separate problems. We propose to train interdependent deep neural networks to predict parametric values and knots. We show that it is possible to include B-spline curve approximation directly into the neural network architecture. The resulting parametrizations yield tight approximations and are able to outperform state-of-the-art methods.

Know when you don't know
(2018)

Deep convolutional neural networks show outstanding performance in image-based phenotype classification given that all existing phenotypes are presented during the training of the network. However, in real-world high-content screening (HCS) experiments, it is often impossible to know all phenotypes in advance. Moreover, novel phenotype discovery itself can be an HCS outcome of interest. This aspect of HCS is not yet covered by classical deep learning approaches. When presenting an image with a novel phenotype to a trained network, it fails to indicate a novelty discovery but assigns the image to a wrong phenotype. To tackle this problem and address the need for novelty detection, we use a recently developed Bayesian approach for deep neural networks called Monte Carlo (MC) dropout to define different uncertainty measures for each phenotype prediction. With real HCS data, we show that these uncertainty measures allow us to identify novel or unclear phenotypes. In addition, we also found that the MC dropout method results in a significant improvement of classification accuracy. The proposed procedure used in our HCS case study can be easily transferred to any existing network architecture and will be beneficial in terms of accuracy and novelty detection.